DNA decoded for Irish potato famine bug
Genome is more than twice as long as relatives, full of 'junk' DNA
Last Updated: Wednesday, September 9, 2009 | 1:15 PM ET
CBC News
Related
Internal Links
An international team of scientists has sequenced the genome of the organism that causes potato blight, the disease that caused the 19th-century Irish potato famine and continues to threaten crops.
Decoding the entire genetic fingerprint of the organism, called P. infestans, could allow researchers to come up with new ways to control potato blight, which is notoriously difficult to fend off. The disease, also called late blight, still costs farmers worldwide $7 billion every year.
The study, led by researchers at the Sainsbury Laboratory in the U.K. and the Broad Institute of MIT and Harvard, found that the organism's genome is unusually large, more than twice as long as related organisms, which enables a rapid evolution of genes. The blight can quickly adapt to new plants, even potatoes that have been bred specifically to resist infection.
The scientists working at dozens of institutions around the world sequenced the entire genome of the organism and compared it with its close relatives, one that infects soybeans and another that causes "sudden oak death."
The genome of P. infestans was found to have 240 million base pairs of DNA, or 2½ to four times more than the genomes of the other pathogens. And most of that additional gene sequence is repetitive DNA, once considered "junk" DNA.
Lengthy DNA aids adaptation
The researchers concluded that this unusual genetic structure allows the organism to adapt quickly to changes in its environment and to a plant's natural defence mechanisms, making it particularly efficient at infecting its hosts.
"We now have a comprehensive view of its genome, revealing the unusual properties that drive its remarkable adaptability. Hopefully, this knowledge can foster novel approaches to diagnose and respond to outbreaks," said the study's senior author Chad Nusbaum, co-director of the Genome Sequencing and Analysis Program at the Broad Institute, in a release.
The Great Hunger, or Irish potato famine, of the 1840s was caused by late blight, and led to the deaths of more than one million people and a wave of immigration from Ireland to North America.
P. infestans, the organism that causes the blight, was once considered a fungus, but is now known to be a single-celled protozoan similar to the malaria parasite.
Late blight starts on the leaf of the potato and works its way down into the tuber, making it inedible. It can wipe out a field of potatoes in just a few days. The disease thrives in cool, wet weather, and can also infect tomato plants.
Some varieties of potato have been bred for resistance to blight, but the vast majority of potatoes eaten around the world are russet potatoes, which are cheap to produce, have long tubers ideal for making french fries, and are extremely vulnerable to P. infestans.
Nik Grunwald, a USDA plant pathologist and member of the research team, said farmers have to use up to 15 chemical sprays a season to keep the blight from wiping out russet potato crops.
Share Tools
Top News Headlines
- Oda's travel expenses cause dissent in Tory caucus
- Conservative MP John Williamson, who was once head of the Canadian Taxpayers Federation, has raised the issue of International Co-operation Minister Bev Oda's spending habits behind closed doors with the Conservative caucus. more »
- Canada accused of 'complicity' in torture in UN report
- The United Nations Committee Against Torture has condemned what it calls Canadian "complicity" in torture and human rights violations of Muslim men caught up in the post-9/11 security net. Terry Milewski has exclusive details. more »
- Diamond Jubilee: Your photos of royal encounters
- The CBC Community team asked you to submit your best photos of the Queen's visits to Canada, or visits by any member of the Royal Family. The result was tremendous! more »
- Helicopter crash kills 3 near Terrace, B.C.
- All three people aboard a helicopter that went down west of Terrace, B.C., died in the crash, the aircraft's owners say. more »
Latest Technology & Science News Headlines
- Newly mapped tomato genome could yield tastier, hardier fruit
- You might think you know all you need to know about the humble tomato, but now, you can truly get a look at what this fleshy fruit is made of thanks to the work of about 300 scientists who have identified almost all of the genes that make up one common variety. more »
- Last chance to see Venus transit across sun
- If you happen to glance at the sun in the early evening next Tuesday and notice a black dot moving across it, fear not, that's not dust in your eye or an early sign of glaucoma — it's Venus. more »
- Call of Duty creators, Activision settle legal fight
- Activision has reached a settlement with the creators of the hit video game series Call of Duty following a bitter legal battle. more »
- Google flags censored search words to Chinese users
- Google has fired a new salvo in its censorship battle with Beijing by adding a feature that warns users in China each time they enter keywords into its search engine that might produce blocked results and suggests they try other terms. more »
- Social mapping software turns neighbourhoods into 'Livehoods'
- You might have no doubt about what neighbourhood you live in, but can you pinpoint your livehood? If you're in Montreal, you can now, thanks to a new mapping software that redraws traditional city boundaries using data gleaned from social media applications such as Twitter and Foursquare. more »
Bob McDonald's Blog
SpaceX got it right when things went wrong Jun. 1, 2012 2:55 PM It was back slaps and hugs all around this week as the Dragon space capsule, the first privately-built spacecraft to visit the International Space Station, returned safely to Earth. What's most impressive is how problems that arose during the mission were solved along the way.
Quirks & Quarks
- June 2: The Day the World Discovered the Sun Jun. 1, 2012 4:32 PM We'll look back at the Transit of Venus in 1769, which sparked a worldwide competition among aspiring global superpowers, each sending its own scientific expedition to far-flung destinations to track the transit, in order to measure the distance to the Sun.
Latest Features
- Body-parts victim a Chinese student in Montreal
- Edmonton teacher suspended for giving 0s
- Flooding closes Toronto subway hub Union station
- Owner defends 'gore' site connected to Luka Magnotta
- New duty-free limits will challenge Canadian retailers
- Copyright board to charge for music at weddings, parades
- Helicopter crash kills 3 near Terrace, B.C.
- Alberta teen hospitalized after fight involving dozens of students
- 2,000 jobs cut as GM to close Oshawa plant

